CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1261 rna-evm.model.Chr10.1261 Chr10 39696467 39706055 PREDICTED: Spermidine synthase nan K24034
gene-evm.TU.Chr10.1262 rna-evm.model.Chr10.1262 Chr10 39709404 39722985 PREDICTED: E3 ubiquitin-protein ligase MIB1 GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr10.1263 rna-evm.model.Chr10.1263 Chr10 39724303 39745295 PREDICTED: Cell surface hyaluronidase nan K22144
gene-evm.TU.Chr10.1264 rna-evm.model.Chr10.1264 Chr10 39747130 39757240 PREDICTED: Neuropeptide S receptor GO:0004930;GO:0007186;GO:0016020 K08376
gene-evm.TU.Chr10.1265 rna-evm.model.Chr10.1265 Chr10 39808823 39810572 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr10.1266 rna-evm.model.Chr10.1266 Chr10 39810925 39813335 PREDICTED: Zinc finger protein 570 GO:0003676 K09228
gene-evm.TU.Chr10.1267 rna-evm.model.Chr10.1267 Chr10 39813641 39820673 PREDICTED: Vertnin nan K13717
gene-evm.TU.Chr10.1268 rna-evm.model.Chr10.1268 Chr10 39857503 39857688 uncharacterized protein nan nan
gene-evm.TU.Chr10.1270 rna-evm.model.Chr10.1270 Chr10 39866079 39876197 PREDICTED: Organic cation transporter protein GO:0016020;GO:0022857;GO:0055085 K08202
gene-evm.TU.Chr10.1272 rna-evm.model.Chr10.1272 Chr10 39888321 39923329 PREDICTED: Neuropeptide S receptor GO:0004930;GO:0007186;GO:0016020 K08376

For more detailed data, you can explore the Download section to access the full dataset.