CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1332 rna-evm.model.Chr10.1332 Chr10 41926074 41926754 PREDICTED: PiggyBac transposable element-derived protein 4 nan K23309
gene-evm.TU.Chr10.1333 rna-evm.model.Chr10.1333 Chr10 42065733 42070203 uncharacterized protein nan K12384
gene-evm.TU.Chr10.1334 rna-evm.model.Chr10.1334 Chr10 42075092 42087469 PREDICTED: Transmembrane protein 163 nan K14694
gene-evm.TU.Chr10.1335 rna-evm.model.Chr10.1335.1 Chr10 42092026 42139726 PREDICTED: Transmembrane protein 47 GO:0016020 K24190
gene-evm.TU.Chr10.1336 rna-evm.model.Chr10.1336 Chr10 42145848 42158233 PREDICTED: General transcription factor IIH subunit 2 GO:0003676;GO:0006281;GO:0008270 K03142
gene-evm.TU.Chr10.1338 rna-evm.model.Chr10.1338 Chr10 42227027 42257486 PREDICTED: Dynamin-like 120 kDa protein, mitochondrial GO:0003924;GO:0005525;GO:0005739;GO:0006915;GO:0007005 K17079
gene-evm.TU.Chr10.1339 rna-evm.model.Chr10.1339 Chr10 42264893 42272408 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr10.134 rna-evm.model.Chr10.134 Chr10 4762869 4763204 uncharacterized protein nan K08757
gene-evm.TU.Chr10.1340 rna-evm.model.Chr10.1340 Chr10 42279492 42281006 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr10.1341 rna-evm.model.Chr10.1341 Chr10 42283188 42287953 PREDICTED: Amine sulfotransferase GO:0008146 K01016

For more detailed data, you can explore the Download section to access the full dataset.