CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1342 rna-evm.model.Chr10.1342 Chr10 42293877 42296584 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.1344 rna-evm.model.Chr10.1344 Chr10 42508614 42523035 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr10.1347 rna-evm.model.Chr10.1347 Chr10 42703742 42704827 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr10.1348 rna-evm.model.Chr10.1348 Chr10 42777235 42797033 PREDICTED: Neprilysin-1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.1349 rna-evm.model.Chr10.1349 Chr10 42797977 42800088 uncharacterized protein nan K20189
gene-evm.TU.Chr10.1350 rna-evm.model.Chr10.1350 Chr10 42802628 42822621 PREDICTED: Membrane metallo-endopeptidase-like 1 GO:0004222;GO:0006508 K08635
gene-evm.TU.Chr10.1351 rna-evm.model.Chr10.1351 Chr10 42823100 42823441 uncharacterized protein nan nan
gene-evm.TU.Chr10.1352 rna-evm.model.Chr10.1352 Chr10 42825321 42826079 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr10.1353 rna-evm.model.Chr10.1353 Chr10 42841152 42869975 PREDICTED: Endothelin-converting enzyme 2 GO:0004222;GO:0006508 K01415
gene-evm.TU.Chr10.1354 rna-evm.model.Chr10.1354 Chr10 42872782 42928839 PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial GO:0003824;GO:0016491;GO:0050660;GO:0055114;GO:0071949 K18204

For more detailed data, you can explore the Download section to access the full dataset.