CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1295 rna-evm.model.Chr10.1295 Chr10 40566243 40600085 PREDICTED: Macrophage-expressed gene 1 protein nan K26547
gene-evm.TU.Chr10.1296 rna-evm.model.Chr10.1296 Chr10 40609689 40613622 PREDICTED: Macrophage-expressed gene 1 protein nan K26547
gene-evm.TU.Chr10.1297 rna-evm.model.Chr10.1297 Chr10 40615923 40621736 PREDICTED: ATP-dependent RNA helicase DDX58 [EC:3.6.4.13] nan K12646
gene-evm.TU.Chr10.1298 rna-evm.model.Chr10.1298 Chr10 40630541 40637145 PREDICTED: Translocon-associated protein subunit gamma GO:0006614;GO:0016020 K13251
gene-evm.TU.Chr10.1299 rna-evm.model.Chr10.1299 Chr10 40638965 40666701 PREDICTED: Peroxisome biogenesis factor 2 GO:0046872 K06664
gene-evm.TU.Chr10.1300_evm.TU.Chr10.1301 rna-evm.model.Chr10.1300_evm.model.Chr10.1301 Chr10 40649777 40759640 PREDICTED: Rootletin GO:0007098;GO:0035253 K16469
gene-evm.TU.Chr10.1302 rna-evm.model.Chr10.1302 Chr10 40766409 40782721 PREDICTED: Endoglucanase A GO:0004553;GO:0005975 K01179
gene-evm.TU.Chr10.1303 rna-evm.model.Chr10.1303 Chr10 40784927 40794047 PREDICTED: Endoglucanase A GO:0004553;GO:0005975;GO:0030246 K01179
gene-evm.TU.Chr10.1304 rna-evm.model.Chr10.1304 Chr10 40794441 40802394 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005975 K01179
gene-evm.TU.Chr10.1306 rna-evm.model.Chr10.1306 Chr10 40804054 40828870 PREDICTED: complement component 4 nan K15410

For more detailed data, you can explore the Download section to access the full dataset.