CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1273 rna-evm.model.Chr10.1273 Chr10 39980684 39981157 PREDICTED: Coagulation factor V nan K12773
gene-evm.TU.Chr10.1275 rna-evm.model.Chr10.1275 Chr10 39994860 39995903 PREDICTED: Neuropeptides capa receptor GO:0004930;GO:0007186;GO:0016020 K04284
gene-evm.TU.Chr10.1276 rna-evm.model.Chr10.1276 Chr10 39999118 40004823 PREDICTED: Cytidine deaminase nan K01489
gene-evm.TU.Chr10.1277 rna-evm.model.Chr10.1277 Chr10 40010358 40011422 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr10.1278 rna-evm.model.Chr10.1278 Chr10 40013479 40023433 uncharacterized protein nan nan
gene-evm.TU.Chr10.128 rna-evm.model.Chr10.128 Chr10 4608946 4612312 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K14960
gene-evm.TU.Chr10.1280 rna-evm.model.Chr10.1280 Chr10 40109012 40110100 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr10.1281 rna-evm.model.Chr10.1281 Chr10 40224592 40225758 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26203
gene-evm.TU.Chr10.1283_evm.TU.Chr10.1284 rna-evm.model.Chr10.1283_evm.model.Chr10.1284 Chr10 40377901 40394920 PREDICTED: Metabotropic glutamate receptor 8 GO:0004930;GO:0007186;GO:0016020 K04610
gene-evm.TU.Chr10.1285 rna-evm.model.Chr10.1285 Chr10 40397158 40463351 PREDICTED: Actin filament-associated protein 1 nan K17536

For more detailed data, you can explore the Download section to access the full dataset.