CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1245 rna-evm.model.Chr10.1245 Chr10 39396311 39407446 PREDICTED: Peroxisomal membrane protein PEX14 GO:0005515;GO:0005778;GO:0016560 K13343
gene-evm.TU.Chr10.1246 rna-evm.model.Chr10.1246 Chr10 39407527 39412998 uncharacterized protein nan nan
gene-evm.TU.Chr10.1247 rna-evm.model.Chr10.1247 Chr10 39415220 39416272 uncharacterized protein nan K23890
gene-evm.TU.Chr10.1248 rna-evm.model.Chr10.1248 Chr10 39425414 39426248 uncharacterized protein nan K14308
gene-evm.TU.Chr10.1253 rna-evm.model.Chr10.1253 Chr10 39435371 39493782 PREDICTED: Low-density lipoprotein receptor-related protein 1B GO:0005515 K20049
gene-evm.TU.Chr10.1254 rna-evm.model.Chr10.1254 Chr10 39509922 39538926 PREDICTED: DNA repair protein REV1 GO:0003684;GO:0006281 K03515
gene-evm.TU.Chr10.1255 rna-evm.model.Chr10.1255 Chr10 39548850 39550592 uncharacterized protein nan nan
gene-evm.TU.Chr10.1256 rna-evm.model.Chr10.1256.1 Chr10 39553367 39576781 PREDICTED: Caspase-8 GO:0004197;GO:0006508;GO:0006915;GO:0008234;GO:0042981 K02186
gene-evm.TU.Chr10.1257 rna-evm.model.Chr10.1257 Chr10 39597334 39616618 PREDICTED: Paired box protein Pax-7 GO:0003677;GO:0006355 K09381
gene-evm.TU.Chr10.1260 rna-evm.model.Chr10.1260 Chr10 39649622 39690700 PREDICTED: Chloride transport protein 6 GO:0005247;GO:0006821;GO:0016020;GO:0055085 K05015

For more detailed data, you can explore the Download section to access the full dataset.