CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1286 rna-evm.model.Chr10.1286 Chr10 40476452 40477068 PREDICTED: Prohibitin-2 GO:0016020 K17081
gene-evm.TU.Chr10.1287 rna-evm.model.Chr10.1287 Chr10 40477641 40486521 PREDICTED: Prohibitin-2 GO:0016020 K17081
gene-evm.TU.Chr10.1288 rna-evm.model.Chr10.1288 Chr10 40493875 40495180 uncharacterized protein nan nan
gene-evm.TU.Chr10.1289 rna-evm.model.Chr10.1289 Chr10 40499319 40505201 PREDICTED: 39S ribosomal protein L47, mitochondrial GO:0003735;GO:0005761;GO:0006412 K17428
gene-evm.TU.Chr10.129 rna-evm.model.Chr10.129 Chr10 4613766 4621067 PREDICTED: Zinc finger protein 862 nan K24642
gene-evm.TU.Chr10.1290 rna-evm.model.Chr10.1290 Chr10 40507149 40511283 PREDICTED: Macrophage-expressed gene 1 protein nan K26547
gene-evm.TU.Chr10.1291 rna-evm.model.Chr10.1291 Chr10 40511856 40512957 PREDICTED: Putative uncharacterized transposon-derived protein F54H12.3 GO:0015074 K11586
gene-evm.TU.Chr10.1292 rna-evm.model.Chr10.1292 Chr10 40513128 40514037 PREDICTED: zinc finger homeobox protein 4-like nan K15157
gene-evm.TU.Chr10.1293 rna-evm.model.Chr10.1293 Chr10 40514107 40514889 PREDICTED: zinc finger homeobox protein 4-like nan K09239
gene-evm.TU.Chr10.1294 rna-evm.model.Chr10.1294 Chr10 40532212 40556606 PREDICTED: Macrophage-expressed gene 1 protein nan K26547

For more detailed data, you can explore the Download section to access the full dataset.