CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1356 rna-evm.model.Chr10.1356 Chr10 43013570 43024357 PREDICTED: Snaclec CTL-Eoc125 nan K06559
gene-evm.TU.Chr10.1359 rna-evm.model.Chr10.1359 Chr10 43091288 43093580 PREDICTED: LPXTG cell wall anchor domain-containing protein nan K13171
gene-evm.TU.Chr10.1360 rna-evm.model.Chr10.1360 Chr10 43104858 43121140 PREDICTED: RING finger protein 207 GO:0008270;GO:0030544;GO:0046872 K12021
gene-evm.TU.Chr10.1361 rna-evm.model.Chr10.1361 Chr10 43130188 43147915 PREDICTED: DnaJ homolog subfamily C member 16 nan K09536
gene-evm.TU.Chr10.1362 rna-evm.model.Chr10.1362 Chr10 43148226 43173322 PREDICTED: ATP-dependent RNA helicase DDX19A GO:0003676;GO:0005524 K18655
gene-evm.TU.Chr10.1363 rna-evm.model.Chr10.1363 Chr10 43215391 43237836 PREDICTED: Cdc42 homolog GO:0003924;GO:0005525;GO:0007264 K04393
gene-evm.TU.Chr10.1364 rna-evm.model.Chr10.1364 Chr10 43248290 43262663 PREDICTED: Beta-1,4-mannosyltransferase egh GO:0019187 K02359
gene-evm.TU.Chr10.1365 rna-evm.model.Chr10.1365 Chr10 43267549 43274990 PREDICTED: Fanconi anemia core complex-associated protein 20 GO:0043130 K04972
gene-evm.TU.Chr10.1367 rna-evm.model.Chr10.1367 Chr10 43301649 43302221 PREDICTED: cysteinyl leukotriene receptor 1 GO:0016020 K08428
gene-evm.TU.Chr10.1369 rna-evm.model.Chr10.1369 Chr10 43455252 43466889 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0004842;GO:0005515;GO:0008270;GO:0016567;GO:0046872 K10645

For more detailed data, you can explore the Download section to access the full dataset.