CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1318 rna-evm.model.Chr10.1318 Chr10 41223942 41298058 PREDICTED: Transcription factor HIVEP3 GO:0003676 K24852
gene-evm.TU.Chr10.1319 rna-evm.model.Chr10.1319 Chr10 41322609 41335972 PREDICTED: Tigger transposable element-derived protein 2 GO:0003676;GO:0003677 K11496
gene-evm.TU.Chr10.1320 rna-evm.model.Chr10.1320 Chr10 41352852 41355887 PREDICTED: Receptor-type guanylate cyclase gcy-12 GO:0004383;GO:0006182 K01769
gene-evm.TU.Chr10.1321 rna-evm.model.Chr10.1321 Chr10 41357616 41365989 PREDICTED: Guanylate cyclase 2G GO:0009190;GO:0016849;GO:0035556 K12324
gene-evm.TU.Chr10.1323 rna-evm.model.Chr10.1323 Chr10 41387858 41394833 PREDICTED: Transcription intermediary factor 1-alpha GO:0008270 K12026
gene-evm.TU.Chr10.1324 rna-evm.model.Chr10.1324 Chr10 41399227 41426886 PREDICTED: Cathelicidin-B1 nan K25705
gene-evm.TU.Chr10.1325 rna-evm.model.Chr10.1325 Chr10 41457335 41498171 PREDICTED: Rho guanine nucleotide exchange factor 16 GO:0005085;GO:0005515;GO:0035023 K07525
gene-evm.TU.Chr10.1326 rna-evm.model.Chr10.1326 Chr10 41577805 41597166 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004383;GO:0006182;GO:0009190;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr10.1328_evm.TU.Chr10.1329 rna-evm.model.Chr10.1328_evm.model.Chr10.1329 Chr10 41822775 41851354 uncharacterized protein nan nan
gene-evm.TU.Chr10.1331 rna-evm.model.Chr10.1331 Chr10 41925362 41925826 PREDICTED: PiggyBac transposable element-derived protein 4 nan nan

For more detailed data, you can explore the Download section to access the full dataset.