CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1208 rna-evm.model.Chr1.1208 Chr1 37312202 37313266 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K05465
gene-evm.TU.Chr1.1210 rna-evm.model.Chr1.1210 Chr1 37438170 37440784 PREDICTED: calmodulin GO:0005509 K16465
gene-evm.TU.Chr1.1213 rna-evm.model.Chr1.1213 Chr1 37451929 37471896 PREDICTED: Cubilin nan K14616
gene-evm.TU.Chr1.1214 rna-evm.model.Chr1.1214 Chr1 37471920 37472465 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.1215 rna-evm.model.Chr1.1215 Chr1 37473452 37477981 PREDICTED: Deleted in malignant brain tumors 1 protein nan K14616
gene-evm.TU.Chr1.1217 rna-evm.model.Chr1.1217 Chr1 37495489 37499372 PREDICTED: Neurotactin nan K03929
gene-evm.TU.Chr1.1218 rna-evm.model.Chr1.1218 Chr1 37507633 37512311 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H4 nan K24514
gene-evm.TU.Chr1.1219 rna-evm.model.Chr1.1219 Chr1 37516682 37520310 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H4 nan K24514
gene-evm.TU.Chr1.122 rna-evm.model.Chr1.122 Chr1 4012888 4021748 PREDICTED: UPF0547 protein C16orf87 homolog nan K19789
gene-evm.TU.Chr1.1220 rna-evm.model.Chr1.1220 Chr1 37522930 37527933 PREDICTED: Neurotactin nan K03929

For more detailed data, you can explore the Download section to access the full dataset.