CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1234 rna-evm.model.Chr10.1234 Chr10 39088262 39126965 PREDICTED: DDB1- and CUL4-associated factor 17 GO:0005515;GO:0016567 K23331
gene-evm.TU.Chr10.1235 rna-evm.model.Chr10.1235 Chr10 39130961 39136150 PREDICTED: Centromere protein S GO:0000776;GO:0006281;GO:0051382;GO:0071821 K11511
gene-evm.TU.Chr10.1236 rna-evm.model.Chr10.1236 Chr10 39138235 39141279 PREDICTED: calreticulin nan K05799
gene-evm.TU.Chr10.1237 rna-evm.model.Chr10.1237 Chr10 39154332 39163193 uncharacterized protein nan K16687
gene-evm.TU.Chr10.1238 rna-evm.model.Chr10.1238 Chr10 39175928 39224656 PREDICTED: Kazrin GO:0005515 K27096
gene-evm.TU.Chr10.1240 rna-evm.model.Chr10.1240 Chr10 39244636 39254205 uncharacterized protein nan K06846
gene-evm.TU.Chr10.1241 rna-evm.model.Chr10.1241 Chr10 39258457 39276427 PREDICTED: COP9 signalosome complex subunit 7b GO:0008180;GO:0010387 K12180
gene-evm.TU.Chr10.1242 rna-evm.model.Chr10.1242 Chr10 39281092 39299474 PREDICTED: Guanine nucleotide-binding protein subunit beta GO:0005515;GO:0007165 K04536
gene-evm.TU.Chr10.1243 rna-evm.model.Chr10.1243 Chr10 39321304 39353187 PREDICTED: GRB10-interacting GYF protein 2 GO:0005515 K18730
gene-evm.TU.Chr10.1244 rna-evm.model.Chr10.1244 Chr10 39372684 39388992 PREDICTED: F-box protein At1g78280 nan K11323

For more detailed data, you can explore the Download section to access the full dataset.