CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1224 rna-evm.model.Chr10.1224 Chr10 38959772 38981702 PREDICTED: Protein kinase C iota type GO:0004672;GO:0004674;GO:0005524;GO:0006468 K06069
gene-evm.TU.Chr10.1225 rna-evm.model.Chr10.1225 Chr10 38990083 38990391 uncharacterized protein nan nan
gene-evm.TU.Chr10.1226 rna-evm.model.Chr10.1226 Chr10 38991098 38991730 PREDICTED: mucin-13 nan K22870
gene-evm.TU.Chr10.1227 rna-evm.model.Chr10.1227 Chr10 38995710 39036314 PREDICTED: Pleckstrin homology domain-containing family M member 3 GO:0035556 K23282
gene-evm.TU.Chr10.1228 rna-evm.model.Chr10.1228 Chr10 39046555 39051399 uncharacterized protein nan nan
gene-evm.TU.Chr10.1229 rna-evm.model.Chr10.1229 Chr10 39052478 39054679 uncharacterized protein nan K10636
gene-evm.TU.Chr10.1230 rna-evm.model.Chr10.1230 Chr10 39058866 39063252 PREDICTED: Serine--pyruvate aminotransferase, mitochondrial nan K00830
gene-evm.TU.Chr10.1231 rna-evm.model.Chr10.1231 Chr10 39068886 39082512 PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog GO:0003723 K07565
gene-evm.TU.Chr10.1232 rna-evm.model.Chr10.1232 Chr10 39076350 39078432 PREDICTED: THAP domain-containing protein 11 GO:0003676 K23203
gene-evm.TU.Chr10.1233 rna-evm.model.Chr10.1233 Chr10 39078982 39081785 PREDICTED: hemicentin nan K11396

For more detailed data, you can explore the Download section to access the full dataset.