CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.121 rna-evm.model.Chr10.121 Chr10 4379260 4383888 PREDICTED: Sperm-associated antigen 7 homolog nan K04218
gene-evm.TU.Chr10.1213 rna-evm.model.Chr10.1213 Chr10 38398302 38534359 PREDICTED: Multiple epidermal growth factor-like domains protein 6 GO:0005509;GO:0005515 K24333
gene-evm.TU.Chr10.1214 rna-evm.model.Chr10.1214 Chr10 38648055 38710733 PREDICTED: Calsyntenin-2 GO:0005509;GO:0007156;GO:0016020 K22660
gene-evm.TU.Chr10.1215 rna-evm.model.Chr10.1215 Chr10 38735448 38817637 PREDICTED: Mitofusin-2 GO:0003924;GO:0005525;GO:0005741;GO:0008053;GO:0016020 K21356
gene-evm.TU.Chr10.1216 rna-evm.model.Chr10.1216 Chr10 38832063 38846409 PREDICTED: Metal tolerance protein 4 GO:0006812;GO:0008324;GO:0016020;GO:0055085 K13283
gene-evm.TU.Chr10.1218 rna-evm.model.Chr10.1218 Chr10 38854233 38869214 PREDICTED: Small vasohibin-binding protein nan K23357
gene-evm.TU.Chr10.1219 rna-evm.model.Chr10.1219 Chr10 38874180 38875157 PREDICTED: maspardin nan K22153
gene-evm.TU.Chr10.1220 rna-evm.model.Chr10.1220 Chr10 38877938 38896760 PREDICTED: F-actin-capping protein subunit beta GO:0008290;GO:0051016 K10365
gene-evm.TU.Chr10.1222 rna-evm.model.Chr10.1222 Chr10 38905001 38905477 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D GO:0003676 K01152
gene-evm.TU.Chr10.1223 rna-evm.model.Chr10.1223 Chr10 38921205 38953136 PREDICTED: Protein kinase C iota type GO:0004672;GO:0004674;GO:0005515;GO:0005524;GO:0006468;GO:0035556 K06069

For more detailed data, you can explore the Download section to access the full dataset.