CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1185 rna-evm.model.Chr10.1185 Chr10 37565494 37655491 PREDICTED: Leucine-, glutamate- and lysine-rich protein 1 nan K23368
gene-evm.TU.Chr10.1186 rna-evm.model.Chr10.1186 Chr10 37676487 37737446 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0005515;GO:0006486;GO:0007165;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr10.1187 rna-evm.model.Chr10.1187 Chr10 37740297 37749182 PREDICTED: Cytidine deaminase nan K01489
gene-evm.TU.Chr10.1188 rna-evm.model.Chr10.1188 Chr10 37752971 37753462 PREDICTED: solute carrier family 15, member 5 nan K07497
gene-evm.TU.Chr10.1189 rna-evm.model.Chr10.1189 Chr10 37772000 37776153 PREDICTED: ribonuclease P/MRP protein subunit POP1 [EC:3.1.26.5] nan K01142
gene-evm.TU.Chr10.119 rna-evm.model.Chr10.119 Chr10 4359878 4360479 uncharacterized protein nan nan
gene-evm.TU.Chr10.1192_evm.TU.Chr10.1191 rna-evm.model.Chr10.1192_evm.model.Chr10.1191 Chr10 37788750 37844564 PREDICTED: Contactin GO:0005515 K06760
gene-evm.TU.Chr10.1193 rna-evm.model.Chr10.1193 Chr10 37852891 37877849 PREDICTED: Contactin GO:0005515;GO:0007399;GO:0031175 K06760
gene-evm.TU.Chr10.1194 rna-evm.model.Chr10.1194 Chr10 37969728 37976455 uncharacterized protein GO:0003676 K23204
gene-evm.TU.Chr10.1195 rna-evm.model.Chr10.1195 Chr10 38071051 38071403 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K18440

For more detailed data, you can explore the Download section to access the full dataset.