CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1173 rna-evm.model.Chr10.1173 Chr10 37194827 37237511 PREDICTED: tRNA pseudouridine(38/39) synthase GO:0001522;GO:0003723;GO:0009451;GO:0009982 K01855
gene-evm.TU.Chr10.1174_evm.TU.Chr10.1175 rna-evm.model.Chr10.1174_evm.model.Chr10.1175 Chr10 37243124 37248514 PREDICTED: Protein FAM151B nan K17298
gene-evm.TU.Chr10.1176 rna-evm.model.Chr10.1176 Chr10 37248874 37252717 PREDICTED: Glyoxylate reductase/hydroxypyruvate reductase GO:0016616;GO:0051287;GO:0055114 K00049
gene-evm.TU.Chr10.1177 rna-evm.model.Chr10.1177 Chr10 37256942 37278426 PREDICTED: Contactin GO:0005515 K06760
gene-evm.TU.Chr10.1179 rna-evm.model.Chr10.1179 Chr10 37356508 37409588 PREDICTED: 6-phosphogluconate dehydrogenase, decarboxylating GO:0004616;GO:0006098;GO:0050661;GO:0055114 K00033
gene-evm.TU.Chr10.118 rna-evm.model.Chr10.118 Chr10 4288318 4298721 PREDICTED: Feeding circuit activating peptides GO:0005184 nan
gene-evm.TU.Chr10.1180 rna-evm.model.Chr10.1180 Chr10 37422385 37452753 PREDICTED: Adipolin nan K21410
gene-evm.TU.Chr10.1182 rna-evm.model.Chr10.1182 Chr10 37486462 37501727 PREDICTED: Homeobox protein aristaless GO:0003677 K09451
gene-evm.TU.Chr10.1183 rna-evm.model.Chr10.1183 Chr10 37511036 37531435 PREDICTED: trichohyalin nan nan
gene-evm.TU.Chr10.1184 rna-evm.model.Chr10.1184 Chr10 37538802 37558397 uncharacterized protein nan K06546

For more detailed data, you can explore the Download section to access the full dataset.