CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1163 rna-evm.model.Chr10.1163 Chr10 36845190 36852448 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0003950;GO:0046872 K15259
gene-evm.TU.Chr10.1164 rna-evm.model.Chr10.1164.1 Chr10 36863588 36897189 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0003950;GO:0046872 K15259
gene-evm.TU.Chr10.1165 rna-evm.model.Chr10.1165 Chr10 36898470 36899929 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr10.1166 rna-evm.model.Chr10.1166 Chr10 36903285 36908421 uncharacterized protein nan nan
gene-evm.TU.Chr10.1167 rna-evm.model.Chr10.1167 Chr10 36915913 36922306 PREDICTED: aurora kinase A-interacting protein nan K16830
gene-evm.TU.Chr10.1168 rna-evm.model.Chr10.1168 Chr10 36923347 36932230 PREDICTED: Type-1 angiotensin II receptor-associated protein GO:0038166 K20263
gene-evm.TU.Chr10.1169_evm.TU.Chr10.1170 rna-evm.model.Chr10.1169_evm.model.Chr10.1170 Chr10 36938931 37145609 PREDICTED: Rap1 GTPase-activating protein 1 GO:0005096;GO:0030695;GO:0051056 K17700
gene-evm.TU.Chr10.117 rna-evm.model.Chr10.117 Chr10 4271458 4272630 PREDICTED: StAR-related lipid transfer protein 9 nan K10929
gene-evm.TU.Chr10.1171 rna-evm.model.Chr10.1171 Chr10 37147551 37151902 PREDICTED: polycystin 1L1 nan K22022
gene-evm.TU.Chr10.1172 rna-evm.model.Chr10.1172 Chr10 37152790 37155978 PREDICTED: Thioredoxin domain-containing protein 3-like protein GO:0007155;GO:0030246 K06675

For more detailed data, you can explore the Download section to access the full dataset.