CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1154 rna-evm.model.Chr10.1154 Chr10 36756808 36770373 PREDICTED: Receptor-type tyrosine-protein phosphatase alpha GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr10.1155 rna-evm.model.Chr10.1155 Chr10 36776862 36778605 uncharacterized protein nan K20158
gene-evm.TU.Chr10.1156 rna-evm.model.Chr10.1156 Chr10 36780975 36781652 uncharacterized protein nan nan
gene-evm.TU.Chr10.1157 rna-evm.model.Chr10.1157 Chr10 36781913 36782851 uncharacterized protein nan K06365
gene-evm.TU.Chr10.1158 rna-evm.model.Chr10.1158 Chr10 36787988 36795631 PREDICTED: Caspase-8 GO:0004197;GO:0006508;GO:0008234 K04397
gene-evm.TU.Chr10.1159 rna-evm.model.Chr10.1159 Chr10 36800239 36804212 PREDICTED: Major egg antigen nan K09542
gene-evm.TU.Chr10.116 rna-evm.model.Chr10.116 Chr10 4268186 4271321 PREDICTED: FMRF-amide neuropeptides nan K10184
gene-evm.TU.Chr10.1160 rna-evm.model.Chr10.1160 Chr10 36805689 36815581 uncharacterized protein nan K20997
gene-evm.TU.Chr10.1161 rna-evm.model.Chr10.1161 Chr10 36818794 36826161 uncharacterized protein nan K25715
gene-evm.TU.Chr10.1162 rna-evm.model.Chr10.1162.1 Chr10 36826234 36840084 PREDICTED: Fumarate hydratase class I, aerobic GO:0016829;GO:0016836 K01676

For more detailed data, you can explore the Download section to access the full dataset.