CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.119 rna-evm.model.Chr1.119 Chr1 3792609 3801548 PREDICTED: Gamma-aminobutyric acid receptor subunit alpha-6 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05175
gene-evm.TU.Chr1.1193 rna-evm.model.Chr1.1193 Chr1 36598357 36599259 PREDICTED: Salivary glue protein Sgs-4 nan nan
gene-evm.TU.Chr1.1195 rna-evm.model.Chr1.1195 Chr1 36821096 36823430 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K20807
gene-evm.TU.Chr1.1196 rna-evm.model.Chr1.1196 Chr1 36823619 36826973 uncharacterized protein nan K23837
gene-evm.TU.Chr1.1197 rna-evm.model.Chr1.1197 Chr1 36891493 36896602 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.1198 rna-evm.model.Chr1.1198 Chr1 36932208 36933595 uncharacterized protein nan nan
gene-evm.TU.Chr1.1199 rna-evm.model.Chr1.1199 Chr1 36964977 36966364 uncharacterized protein nan nan
gene-evm.TU.Chr1.12 rna-evm.model.Chr1.12 Chr1 526920 530717 PREDICTED: acidic leucine-rich nuclear phosphoprotein 32 family member A/C/D nan nan
gene-evm.TU.Chr1.1200 rna-evm.model.Chr1.1200 Chr1 37109812 37111818 PREDICTED: BTB/POZ domain-containing protein KCTD16 GO:0051260 K21918
gene-evm.TU.Chr1.1207 rna-evm.model.Chr1.1207 Chr1 37287881 37288070 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.