CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1176 rna-evm.model.Chr1.1176 Chr1 36279749 36331256 PREDICTED: Sodium- and chloride-dependent GABA transporter 2 GO:0016020 K05041
gene-evm.TU.Chr1.1178_evm.TU.Chr1.1179 rna-evm.model.Chr1.1178_evm.model.Chr1.1179 Chr1 36353309 36380473 PREDICTED: Enolase 4 GO:0000015;GO:0000287;GO:0004634;GO:0006096 K01689
gene-evm.TU.Chr1.118 rna-evm.model.Chr1.118 Chr1 3728172 3732693 uncharacterized protein nan K02836
gene-evm.TU.Chr1.1181 rna-evm.model.Chr1.1181 Chr1 36391416 36392358 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr1.1182 rna-evm.model.Chr1.1182 Chr1 36402927 36404796 PREDICTED: Perlucin nan K06468
gene-evm.TU.Chr1.1183 rna-evm.model.Chr1.1183 Chr1 36411751 36412178 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr1.1184 rna-evm.model.Chr1.1184 Chr1 36413505 36415680 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr1.1185_evm.TU.Chr1.1187 rna-evm.model.Chr1.1185_evm.model.Chr1.1187 Chr1 36419515 36442172 PREDICTED: Perlucin nan K06468
gene-evm.TU.Chr1.1186 rna-evm.model.Chr1.1186 Chr1 36423975 36440100 PREDICTED: Perlucin-like protein nan K06468
gene-evm.TU.Chr1.1188 rna-evm.model.Chr1.1188 Chr1 36483867 36485556 PREDICTED: Perlucin nan K06468

For more detailed data, you can explore the Download section to access the full dataset.