CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1040 rna-evm.model.Chr10.1040 Chr10 33845672 33849291 PREDICTED: remodeling and spacing factor 1 nan K14138
gene-evm.TU.Chr10.1041 rna-evm.model.Chr10.1041 Chr10 33851969 33853702 uncharacterized protein nan K05759
gene-evm.TU.Chr10.1042 rna-evm.model.Chr10.1042 Chr10 33906212 33919555 PREDICTED: Y-box factor homolog GO:0003676 K09276
gene-evm.TU.Chr10.1043 rna-evm.model.Chr10.1043 Chr10 33921029 33926867 PREDICTED: protein kinase D [EC:2.7.11.13] nan K22804
gene-evm.TU.Chr10.1044 rna-evm.model.Chr10.1044 Chr10 33939811 33947425 PREDICTED: Putative G-protein coupled receptor F59B2.13 GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.1045 rna-evm.model.Chr10.1045 Chr10 33949780 33957112 PREDICTED: Sex peptide receptor GO:0004930;GO:0007186;GO:0008528;GO:0016020 K26200
gene-evm.TU.Chr10.1046 rna-evm.model.Chr10.1046 Chr10 33960705 33974431 PREDICTED: AP-2 complex subunit mu GO:0006886;GO:0016192;GO:0030131 K11826
gene-evm.TU.Chr10.1047 rna-evm.model.Chr10.1047 Chr10 33978445 33982436 PREDICTED: 60S ribosomal protein L22 GO:0003735;GO:0005840;GO:0006412 K02891
gene-evm.TU.Chr10.1049 rna-evm.model.Chr10.1049 Chr10 34004784 34007970 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr10.1050 rna-evm.model.Chr10.1050 Chr10 34013329 34016803 PREDICTED: Complement C1q-like protein 4 nan K23284

For more detailed data, you can explore the Download section to access the full dataset.