CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.974 rna-evm.model.Chr1.974 Chr1 29940555 29952826 uncharacterized protein nan K06715
gene-evm.TU.Chr1.975 rna-evm.model.Chr1.975 Chr1 29954019 29957321 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.976 rna-evm.model.Chr1.976 Chr1 29957579 29980057 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.977 rna-evm.model.Chr1.977 Chr1 29988744 29995800 PREDICTED: myosin heavy chain nan K23208
gene-evm.TU.Chr1.979 rna-evm.model.Chr1.979 Chr1 30014749 30015183 uncharacterized protein nan nan
gene-evm.TU.Chr1.98 rna-evm.model.Chr1.98 Chr1 3264280 3277532 uncharacterized protein nan K08836
gene-evm.TU.Chr1.980 rna-evm.model.Chr1.980 Chr1 30015206 30015874 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K15010
gene-evm.TU.Chr1.981 rna-evm.model.Chr1.981 Chr1 30022929 30044634 PREDICTED: kinesin-like protein KIN-14K nan K25609
gene-evm.TU.Chr1.983 rna-evm.model.Chr1.983 Chr1 30061435 30062079 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan nan
gene-evm.TU.Chr1.985 rna-evm.model.Chr1.985 Chr1 30084023 30088955 PREDICTED: myosin heavy chain nan K22782

For more detailed data, you can explore the Download section to access the full dataset.