CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1028 rna-evm.model.Chr10.1028.3 Chr10 33535879 33548501 PREDICTED: Leucine-rich repeat-containing protein 23 GO:0005515 K25549
gene-evm.TU.Chr10.103 rna-evm.model.Chr10.103 Chr10 3925420 3933680 PREDICTED: Endoglucanase nan nan
gene-evm.TU.Chr10.1030 rna-evm.model.Chr10.1030 Chr10 33562835 33563531 uncharacterized protein nan K07508
gene-evm.TU.Chr10.1031 rna-evm.model.Chr10.1031 Chr10 33563583 33564041 uncharacterized protein nan K24300
gene-evm.TU.Chr10.1033 rna-evm.model.Chr10.1033 Chr10 33610554 33627481 PREDICTED: E3 ubiquitin-protein ligase MIB2 GO:0004842;GO:0008270;GO:0016567;GO:0046872 K10645
gene-evm.TU.Chr10.1034 rna-evm.model.Chr10.1034 Chr10 33644805 33673500 PREDICTED: Segment polarity protein dishevelled homolog DVL-3 GO:0005515;GO:0016055;GO:0035556 K02353
gene-evm.TU.Chr10.1035 rna-evm.model.Chr10.1035 Chr10 33745733 33747941 PREDICTED: metacaspase type II, MCP1 nan K07344
gene-evm.TU.Chr10.1036 rna-evm.model.Chr10.1036 Chr10 33776052 33778392 uncharacterized protein nan K06872
gene-evm.TU.Chr10.1037 rna-evm.model.Chr10.1037 Chr10 33792029 33817558 uncharacterized protein nan K07344
gene-evm.TU.Chr10.1038 rna-evm.model.Chr10.1038 Chr10 33824310 33827198 PREDICTED: Flagellar attachment zone protein 1 nan K11371

For more detailed data, you can explore the Download section to access the full dataset.