CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.998 rna-evm.model.Chr1.998 Chr1 30363310 30363909 uncharacterized protein nan K19993
gene-evm.TU.Chr10.1 rna-evm.model.Chr10.1 Chr10 51856 85414 uncharacterized protein nan K07523
gene-evm.TU.Chr10.10 rna-evm.model.Chr10.10 Chr10 538477 539603 uncharacterized protein nan K26843
gene-evm.TU.Chr10.1002 rna-evm.model.Chr10.1002 Chr10 32581939 32589961 uncharacterized protein nan K07963
gene-evm.TU.Chr10.1003 rna-evm.model.Chr10.1003 Chr10 32594375 32606023 PREDICTED: Hemicentin-1 nan K17341
gene-evm.TU.Chr10.1004 rna-evm.model.Chr10.1004 Chr10 32624447 32628583 PREDICTED: Roundabout homolog 1 nan K06467
gene-evm.TU.Chr10.1006 rna-evm.model.Chr10.1006 Chr10 32737663 32746653 PREDICTED: Receptor-type tyrosine-protein phosphatase mu GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr10.1008 rna-evm.model.Chr10.1008 Chr10 32755647 32756405 PREDICTED: p24 family protein gamma-2 nan K20283
gene-evm.TU.Chr10.1009 rna-evm.model.Chr10.1009 Chr10 32763695 32787715 PREDICTED: Receptor-type tyrosine-protein phosphatase T GO:0004725;GO:0005515;GO:0006470 K06776
gene-evm.TU.Chr10.101 rna-evm.model.Chr10.101 Chr10 3851156 3889639 PREDICTED: Phospholipid scramblase 2 GO:0017121;GO:0017128 K22532

For more detailed data, you can explore the Download section to access the full dataset.