CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1084 rna-evm.model.Chr10.1084 Chr10 34999107 35003570 PREDICTED: Protein RER1 GO:0016020 K03893
gene-evm.TU.Chr10.1085 rna-evm.model.Chr10.1085 Chr10 35011435 35040477 PREDICTED: Caspase-9 GO:0004197;GO:0006508;GO:0006915;GO:0008234;GO:0042981 K04399
gene-evm.TU.Chr10.1086 rna-evm.model.Chr10.1086 Chr10 35045536 35071351 PREDICTED: GMP synthase [glutamine-hydrolyzing] GO:0003922;GO:0005524;GO:0006164;GO:0006177;GO:0016462 K01951
gene-evm.TU.Chr10.1087 rna-evm.model.Chr10.1087 Chr10 35071545 35079391 uncharacterized protein nan nan
gene-evm.TU.Chr10.1088 rna-evm.model.Chr10.1088 Chr10 35079898 35088386 PREDICTED: Endoglucanase E-4 GO:0004553;GO:0005975;GO:0030246 K01179
gene-evm.TU.Chr10.1089 rna-evm.model.Chr10.1089 Chr10 35096265 35098751 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K15198
gene-evm.TU.Chr10.109 rna-evm.model.Chr10.109 Chr10 3966246 3980088 uncharacterized protein nan K24496
gene-evm.TU.Chr10.1090 rna-evm.model.Chr10.1090 Chr10 35103176 35128763 PREDICTED: Metal tolerance protein 3 GO:0006812;GO:0008324;GO:0016020;GO:0055085 K13283
gene-evm.TU.Chr10.1091 rna-evm.model.Chr10.1091 Chr10 35157506 35214760 PREDICTED: Protein split ends GO:0003676 K25100
gene-evm.TU.Chr10.1092 rna-evm.model.Chr10.1092 Chr10 35226960 35234742 PREDICTED: Protein transport protein SFT2 GO:0016020;GO:0016192 K10661

For more detailed data, you can explore the Download section to access the full dataset.