CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1093 rna-evm.model.Chr10.1093 Chr10 35263615 35266359 PREDICTED: N-substituted formamide deformylase nan K07047
gene-evm.TU.Chr10.1094 rna-evm.model.Chr10.1094 Chr10 35268356 35275763 PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A GO:0005515 K04984
gene-evm.TU.Chr10.1095 rna-evm.model.Chr10.1095 Chr10 35279966 35290566 PREDICTED: Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial GO:0009055;GO:0051536 K00235
gene-evm.TU.Chr10.1096 rna-evm.model.Chr10.1096 Chr10 35294785 35304628 PREDICTED: protein phosphatase 1 regulatory subunit 35 GO:0010923;GO:0019902 K17574
gene-evm.TU.Chr10.1097 rna-evm.model.Chr10.1097 Chr10 35308442 35321338 uncharacterized protein nan K10716
gene-evm.TU.Chr10.1098 rna-evm.model.Chr10.1098 Chr10 35322030 35329388 PREDICTED: Cytochrome P450 4F6 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07426
gene-evm.TU.Chr10.1099 rna-evm.model.Chr10.1099 Chr10 35330866 35340132 PREDICTED: Probable 28S rRNA (cytosine-C(5))-methyltransferase GO:0008168 K15264
gene-evm.TU.Chr10.11 rna-evm.model.Chr10.11 Chr10 539851 549194 uncharacterized protein nan nan
gene-evm.TU.Chr10.110 rna-evm.model.Chr10.110 Chr10 3998858 4035347 PREDICTED: Protein-S-isoprenylcysteine O-methyltransferase GO:0004671;GO:0005783;GO:0006481;GO:0016020 K00587
gene-evm.TU.Chr10.1100 rna-evm.model.Chr10.1100 Chr10 35344875 35351899 PREDICTED: G-protein coupled receptor 157 GO:0004888;GO:0007166;GO:0016020 K08467

For more detailed data, you can explore the Download section to access the full dataset.