CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1065 rna-evm.model.Chr10.1065 Chr10 34276644 34278483 PREDICTED: complement component 4 nan K24247
gene-evm.TU.Chr10.1066 rna-evm.model.Chr10.1066 Chr10 34282046 34304596 PREDICTED: Gigasin-6 nan K01467
gene-evm.TU.Chr10.1067 rna-evm.model.Chr10.1067 Chr10 34313686 34314524 uncharacterized protein nan K25956
gene-evm.TU.Chr10.1068 rna-evm.model.Chr10.1068 Chr10 34314531 34314788 uncharacterized protein nan K25956
gene-evm.TU.Chr10.1069 rna-evm.model.Chr10.1069 Chr10 34320639 34351356 PREDICTED: Polycystic kidney disease protein 1-like 2 GO:0005509;GO:0005515;GO:0016020 K04988
gene-evm.TU.Chr10.107 rna-evm.model.Chr10.107 Chr10 3951508 3951780 PREDICTED: glycine-rich cell wall structural protein 1.0-like nan nan
gene-evm.TU.Chr10.1070 rna-evm.model.Chr10.1070 Chr10 34397820 34427252 PREDICTED: Polycystic kidney disease and receptor for egg jelly-related protein GO:0005509;GO:0005515;GO:0016020 K04988
gene-evm.TU.Chr10.1078 rna-evm.model.Chr10.1078 Chr10 34753126 34769706 PREDICTED: Polycystic kidney disease protein 1-like 2 GO:0005515 K19921
gene-evm.TU.Chr10.108 rna-evm.model.Chr10.108 Chr10 3955720 3957604 PREDICTED: Glycine-rich RNA-binding protein RZ1C GO:0003676 K15182
gene-evm.TU.Chr10.1080 rna-evm.model.Chr10.1080 Chr10 34882159 34905033 PREDICTED: Polycystic kidney disease protein 1-like 2 GO:0005515 K04988

For more detailed data, you can explore the Download section to access the full dataset.