CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr10.1016 rna-evm.model.Chr10.1016 Chr10 33166010 33178626 PREDICTED: Protein polyglycylase TTLL10 GO:0036211 K23628
gene-evm.TU.Chr10.1017 rna-evm.model.Chr10.1017 Chr10 33243520 33316319 PREDICTED: dentin sialophosphoprotein nan K24630
gene-evm.TU.Chr10.1018 rna-evm.model.Chr10.1018 Chr10 33323139 33330691 uncharacterized protein nan K25718
gene-evm.TU.Chr10.102 rna-evm.model.Chr10.102 Chr10 3907634 3911167 PREDICTED: PE family protein nan nan
gene-evm.TU.Chr10.1020 rna-evm.model.Chr10.1020 Chr10 33404983 33406893 uncharacterized protein nan K17834
gene-evm.TU.Chr10.1023 rna-evm.model.Chr10.1023 Chr10 33423431 33438953 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr10.1024 rna-evm.model.Chr10.1024 Chr10 33443992 33464085 PREDICTED: Sodium- and chloride-dependent glycine transporter 1 GO:0016020 K05038
gene-evm.TU.Chr10.1025 rna-evm.model.Chr10.1025 Chr10 33482871 33493967 PREDICTED: Guanylate cyclase 2G GO:0009190;GO:0016849;GO:0035556 K13863
gene-evm.TU.Chr10.1026 rna-evm.model.Chr10.1026 Chr10 33501963 33507639 PREDICTED: Ceramide-1-phosphate transfer protein GO:0005737;GO:0120009;GO:0120013 K08051
gene-evm.TU.Chr10.1027 rna-evm.model.Chr10.1027 Chr10 33512408 33530518 PREDICTED: Pre-mRNA-splicing factor SPF27 GO:0006397 K12861

For more detailed data, you can explore the Download section to access the full dataset.