CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1163 rna-evm.model.Chr1.1163 Chr1 36022895 36033299 PREDICTED: Vitelline membrane outer layer protein 1 homolog nan K25745
gene-evm.TU.Chr1.1164 rna-evm.model.Chr1.1164 Chr1 36063292 36065683 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr1.1165 rna-evm.model.Chr1.1165 Chr1 36076848 36108858 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.1166 rna-evm.model.Chr1.1166 Chr1 36113308 36115049 uncharacterized protein GO:0016020 K23896
gene-evm.TU.Chr1.117 rna-evm.model.Chr1.117 Chr1 3719247 3721673 uncharacterized protein nan K03570
gene-evm.TU.Chr1.1170 rna-evm.model.Chr1.1170 Chr1 36131747 36136046 PREDICTED: phenylpyruvate tautomerase [EC:5.3.2.1] nan K07253
gene-evm.TU.Chr1.1171 rna-evm.model.Chr1.1171.4 Chr1 36139673 36192633 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.1172 rna-evm.model.Chr1.1172 Chr1 36215111 36225071 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr1.1173 rna-evm.model.Chr1.1173 Chr1 36235498 36254767 PREDICTED: IgGFc-binding protein nan K08001
gene-evm.TU.Chr1.1175 rna-evm.model.Chr1.1175 Chr1 36264957 36266454 uncharacterized protein nan K19200

For more detailed data, you can explore the Download section to access the full dataset.