CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.90 rna-evm.model.Chr1.90 Chr1 3002273 3003281 PREDICTED: Complement C1q-like protein 2 nan K23284
gene-evm.TU.Chr1.900 rna-evm.model.Chr1.900 Chr1 28373950 28375017 PREDICTED: P2Y purinoceptor 2 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr1.902 rna-evm.model.Chr1.902 Chr1 28377604 28396442 PREDICTED: Prestin GO:0008271;GO:0008272;GO:0015116;GO:0016020;GO:0016020;GO:0055085 K14703
gene-evm.TU.Chr1.903_evm.TU.Chr1.904 rna-evm.model.Chr1.903_evm.model.Chr1.904 Chr1 28419105 28480428 PREDICTED: Prestin GO:0008271;GO:0008272;GO:0015116;GO:0016020;GO:0016020;GO:0055085 K14707
gene-evm.TU.Chr1.905 rna-evm.model.Chr1.905 Chr1 28494885 28498366 uncharacterized protein nan nan
gene-evm.TU.Chr1.906 rna-evm.model.Chr1.906 Chr1 28501667 28505198 uncharacterized protein nan K08785
gene-evm.TU.Chr1.908 rna-evm.model.Chr1.908 Chr1 28517896 28527262 PREDICTED: Major facilitator superfamily domain-containing protein 6 nan K05820
gene-evm.TU.Chr1.909 rna-evm.model.Chr1.909 Chr1 28538007 28538501 PREDICTED: major facilitator superfamily domain-containing protein 6-like nan K11537
gene-evm.TU.Chr1.91 rna-evm.model.Chr1.91 Chr1 3016459 3029167 PREDICTED: RWD domain-containing protein 2B GO:0005515 K16196
gene-evm.TU.Chr1.910 rna-evm.model.Chr1.910 Chr1 28538516 28556641 PREDICTED: Major facilitator superfamily domain-containing protein 6-B nan K05820

For more detailed data, you can explore the Download section to access the full dataset.