CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.883 rna-evm.model.Chr1.883 Chr1 27471136 27476232 uncharacterized protein nan K00509
gene-evm.TU.Chr1.886 rna-evm.model.Chr1.886 Chr1 27558590 27569339 uncharacterized protein nan K06794
gene-evm.TU.Chr1.887 rna-evm.model.Chr1.887 Chr1 27591498 27645766 PREDICTED: Penicillin-binding protein 4 nan K01286
gene-evm.TU.Chr1.89 rna-evm.model.Chr1.89 Chr1 2992130 2993439 PREDICTED: Complement C1q-like protein 4 nan K23284
gene-evm.TU.Chr1.892 rna-evm.model.Chr1.892 Chr1 27722794 27724698 PREDICTED: BTB/POZ domain-containing protein 6 GO:0005515 K10478
gene-evm.TU.Chr1.895 rna-evm.model.Chr1.895 Chr1 27771454 27780404 uncharacterized protein GO:0005509 K06268
gene-evm.TU.Chr1.896 rna-evm.model.Chr1.896 Chr1 27977216 27980247 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr1.897 rna-evm.model.Chr1.897 Chr1 28026078 28027838 PREDICTED: complement component 4 nan K09967
gene-evm.TU.Chr1.898 rna-evm.model.Chr1.898 Chr1 28240858 28241818 PREDICTED: C1q-related factor nan K23284
gene-evm.TU.Chr1.9 rna-evm.model.Chr1.9 Chr1 463666 465926 PREDICTED: Death domain-containing protein 1 nan K10130

For more detailed data, you can explore the Download section to access the full dataset.