CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.860 rna-evm.model.Chr1.860 Chr1 26982292 26983134 PREDICTED: Caspase-3 GO:0004197;GO:0006508;GO:0008234 K02187
gene-evm.TU.Chr1.861 rna-evm.model.Chr1.861 Chr1 27003554 27010763 PREDICTED: Caspase-1 GO:0004197;GO:0006508;GO:0008234 K04397
gene-evm.TU.Chr1.862 rna-evm.model.Chr1.862 Chr1 27012676 27038422 PREDICTED: Circadian locomoter output cycles protein kaput GO:0003700;GO:0005634;GO:0005667;GO:0005737;GO:0006355;GO:0046983 K02223
gene-evm.TU.Chr1.863 rna-evm.model.Chr1.863 Chr1 27077564 27093065 PREDICTED: Translation initiation factor eIF-2B subunit epsilon GO:0005515;GO:0009058;GO:0016779 K03240
gene-evm.TU.Chr1.864 rna-evm.model.Chr1.864 Chr1 27097465 27111264 PREDICTED: LOW QUALITY PROTEIN: mucin-2 nan K10955
gene-evm.TU.Chr1.865 rna-evm.model.Chr1.865 Chr1 27120952 27122452 PREDICTED: mucin-2 nan K06501
gene-evm.TU.Chr1.866 rna-evm.model.Chr1.866 Chr1 27132988 27135878 PREDICTED: Tctex1 domain-containing protein 1-B (Fragment) nan K25420
gene-evm.TU.Chr1.867 rna-evm.model.Chr1.867 Chr1 27161422 27168965 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.869 rna-evm.model.Chr1.869 Chr1 27189983 27220010 PREDICTED: CUB and sushi domain-containing protein 3 nan K24469
gene-evm.TU.Chr1.870 rna-evm.model.Chr1.870 Chr1 27220295 27238155 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469

For more detailed data, you can explore the Download section to access the full dataset.