CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.871 rna-evm.model.Chr1.871 Chr1 27253362 27265632 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K06496
gene-evm.TU.Chr1.872 rna-evm.model.Chr1.872 Chr1 27267444 27278401 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr1.876 rna-evm.model.Chr1.876 Chr1 27375368 27378995 PREDICTED: Alpha-mannosidase 2 GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr1.877 rna-evm.model.Chr1.877 Chr1 27393661 27398626 uncharacterized protein nan nan
gene-evm.TU.Chr1.878 rna-evm.model.Chr1.878 Chr1 27403735 27404995 PREDICTED: titin-like, partial nan K20607
gene-evm.TU.Chr1.879 rna-evm.model.Chr1.879 Chr1 27413360 27413913 uncharacterized protein nan nan
gene-evm.TU.Chr1.88 rna-evm.model.Chr1.88 Chr1 2968354 2980407 uncharacterized protein nan K17703
gene-evm.TU.Chr1.880 rna-evm.model.Chr1.880 Chr1 27424594 27429174 uncharacterized protein nan nan
gene-evm.TU.Chr1.881 rna-evm.model.Chr1.881 Chr1 27439278 27461116 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.882 rna-evm.model.Chr1.882 Chr1 27462637 27467937 PREDICTED: Heat shock 70 kDa protein 12A nan K04043

For more detailed data, you can explore the Download section to access the full dataset.