CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.911 rna-evm.model.Chr1.911 Chr1 28562467 28563601 PREDICTED: Glycine-rich domain-containing protein 1 nan K12598
gene-evm.TU.Chr1.915 rna-evm.model.Chr1.915 Chr1 28661749 28708563 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr1.916 rna-evm.model.Chr1.916 Chr1 28757356 28758076 PREDICTED: von Willebrand factor C domain-containing protein 2-like nan K24521
gene-evm.TU.Chr1.917 rna-evm.model.Chr1.917 Chr1 28764297 28771372 uncharacterized protein GO:0005515 K06694
gene-evm.TU.Chr1.918 rna-evm.model.Chr1.918 Chr1 28825375 28850351 PREDICTED: calpain-5 [EC:3.4.22.-] nan K05162
gene-evm.TU.Chr1.92 rna-evm.model.Chr1.92 Chr1 3030396 3079295 PREDICTED: GRB2-associated-binding protein 4 nan K20231
gene-evm.TU.Chr1.920 rna-evm.model.Chr1.920 Chr1 28875447 28984218 PREDICTED: AF4/FMR2 family member 4 nan K15185
gene-evm.TU.Chr1.921 rna-evm.model.Chr1.921 Chr1 28998524 29000635 uncharacterized protein nan K17834
gene-evm.TU.Chr1.922 rna-evm.model.Chr1.922 Chr1 29026595 29028373 uncharacterized protein nan K24237
gene-evm.TU.Chr1.923 rna-evm.model.Chr1.923 Chr1 29030432 29059413 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24237

For more detailed data, you can explore the Download section to access the full dataset.