CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.848 rna-evm.model.Chr1.848 Chr1 26683849 26686380 uncharacterized protein nan K11125
gene-evm.TU.Chr1.849 rna-evm.model.Chr1.849 Chr1 26689659 26692597 PREDICTED: tripartite motif-containing protein 27 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr1.85 rna-evm.model.Chr1.85 Chr1 2818166 2818870 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan K12055
gene-evm.TU.Chr1.851 rna-evm.model.Chr1.851 Chr1 26709103 26729863 PREDICTED: Protein phosphatase methylesterase 1 GO:0006482;GO:0051723 K13617
gene-evm.TU.Chr1.852 rna-evm.model.Chr1.852 Chr1 26730052 26772480 PREDICTED: C2 domain-containing protein 3 nan K16751
gene-evm.TU.Chr1.854 rna-evm.model.Chr1.854 Chr1 26801411 26802644 PREDICTED: DAZ-associated protein 2-like nan K22524
gene-evm.TU.Chr1.855 rna-evm.model.Chr1.855.3 Chr1 26810259 26906139 PREDICTED: Anoctamin-5 GO:0046983 K19499
gene-evm.TU.Chr1.856 rna-evm.model.Chr1.856 Chr1 26913645 26927585 PREDICTED: Telomeric repeat-binding factor 2-interacting protein 1 GO:0000723 K11113
gene-evm.TU.Chr1.857 rna-evm.model.Chr1.857 Chr1 26928627 26929454 PREDICTED: Caspase-1 GO:0004197;GO:0006508;GO:0008234 K04397
gene-evm.TU.Chr1.859 rna-evm.model.Chr1.859 Chr1 26971387 26971824 PREDICTED: Caspase-1 GO:0004197;GO:0006508 K04397

For more detailed data, you can explore the Download section to access the full dataset.