CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.94 rna-evm.model.Chr1.94 Chr1 3128395 3137795 PREDICTED: Amidophosphoribosyltransferase GO:0009116 K00764
gene-evm.TU.Chr1.940 rna-evm.model.Chr1.940 Chr1 29279582 29283808 PREDICTED: Laminin subunit beta-4 nan K22257
gene-evm.TU.Chr1.941 rna-evm.model.Chr1.941 Chr1 29287601 29290683 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.942 rna-evm.model.Chr1.942 Chr1 29295845 29302680 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K20283
gene-evm.TU.Chr1.944 rna-evm.model.Chr1.944 Chr1 29334866 29340951 PREDICTED: Laminin subunit alpha-2 nan K20282
gene-evm.TU.Chr1.945 rna-evm.model.Chr1.945 Chr1 29356246 29356593 uncharacterized protein nan nan
gene-evm.TU.Chr1.946 rna-evm.model.Chr1.946 Chr1 29356604 29423905 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K26098
gene-evm.TU.Chr1.947 rna-evm.model.Chr1.947 Chr1 29424646 29433116 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257
gene-evm.TU.Chr1.949 rna-evm.model.Chr1.949 Chr1 29461815 29468494 PREDICTED: Mitochondria-eating protein GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.95 rna-evm.model.Chr1.95 Chr1 3145173 3155153 PREDICTED: Multifunctional protein ADE2 GO:0006189 K01587

For more detailed data, you can explore the Download section to access the full dataset.