CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.924 rna-evm.model.Chr1.924 Chr1 29088000 29103256 PREDICTED: Prestin GO:0008271;GO:0008272;GO:0015116;GO:0016020;GO:0016020;GO:0055085 K14703
gene-evm.TU.Chr1.926 rna-evm.model.Chr1.926 Chr1 29122810 29132110 PREDICTED: histamine receptor H2 GO:0004930;GO:0007186;GO:0016020 K08428
gene-evm.TU.Chr1.928 rna-evm.model.Chr1.928 Chr1 29146814 29151044 PREDICTED: myosin heavy chain nan K06267
gene-evm.TU.Chr1.93 rna-evm.model.Chr1.93 Chr1 3084447 3113253 PREDICTED: Calpain-15 GO:0004198;GO:0006508 K08582
gene-evm.TU.Chr1.931 rna-evm.model.Chr1.931 Chr1 29170428 29174257 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.932 rna-evm.model.Chr1.932 Chr1 29178337 29188896 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K06267
gene-evm.TU.Chr1.933 rna-evm.model.Chr1.933 Chr1 29200820 29206060 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.935 rna-evm.model.Chr1.935 Chr1 29219687 29223098 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22257
gene-evm.TU.Chr1.937 rna-evm.model.Chr1.937 Chr1 29242456 29253983 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] GO:0005741;GO:0035694 K11499
gene-evm.TU.Chr1.939 rna-evm.model.Chr1.939 Chr1 29271193 29273408 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K15806

For more detailed data, you can explore the Download section to access the full dataset.