CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.950 rna-evm.model.Chr1.950 Chr1 29475250 29482851 PREDICTED: myosin heavy chain nan K10401
gene-evm.TU.Chr1.952 rna-evm.model.Chr1.952 Chr1 29505519 29514404 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K05636
gene-evm.TU.Chr1.953 rna-evm.model.Chr1.953 Chr1 29515468 29533419 PREDICTED: myosin heavy chain nan K11680
gene-evm.TU.Chr1.954 rna-evm.model.Chr1.954 Chr1 29561095 29562664 PREDICTED: Proline-rich transmembrane protein 1 GO:0016020 K23896
gene-evm.TU.Chr1.955 rna-evm.model.Chr1.955 Chr1 29633312 29634421 PREDICTED: myosin heavy chain nan K16718
gene-evm.TU.Chr1.956 rna-evm.model.Chr1.956 Chr1 29639851 29644161 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K22257
gene-evm.TU.Chr1.958 rna-evm.model.Chr1.958 Chr1 29663513 29667876 PREDICTED: myosin heavy chain nan K20282
gene-evm.TU.Chr1.959 rna-evm.model.Chr1.959 Chr1 29671288 29675271 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.96 rna-evm.model.Chr1.96 Chr1 3173736 3174236 PREDICTED: Endo-1,4-beta-xylanase B nan K08631
gene-evm.TU.Chr1.960 rna-evm.model.Chr1.960 Chr1 29685765 29695363 PREDICTED: trichohyalin nan K12478

For more detailed data, you can explore the Download section to access the full dataset.