CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.838 rna-evm.model.Chr1.838 Chr1 26368671 26401594 PREDICTED: Heat shock protein 75 kDa, mitochondrial GO:0005515;GO:0005524;GO:0006457;GO:0051082 K09488
gene-evm.TU.Chr1.84 rna-evm.model.Chr1.84 Chr1 2816589 2817020 PREDICTED: regulating synaptic membrane exocytosis protein 1 nan K04423
gene-evm.TU.Chr1.840 rna-evm.model.Chr1.840 Chr1 26434064 26447802 PREDICTED: CD2-associated protein GO:0005515 K20045
gene-evm.TU.Chr1.841 rna-evm.model.Chr1.841 Chr1 26448082 26448855 PREDICTED: formin 1 nan K16682
gene-evm.TU.Chr1.842 rna-evm.model.Chr1.842 Chr1 26448903 26449372 uncharacterized protein nan nan
gene-evm.TU.Chr1.843 rna-evm.model.Chr1.843 Chr1 26482231 26484155 PREDICTED: BAI1-associated protein 2-like protein GO:0005515 K23645
gene-evm.TU.Chr1.844 rna-evm.model.Chr1.844 Chr1 26586461 26627056 PREDICTED: Heat shock protein 75 kDa, mitochondrial GO:0005524;GO:0006457;GO:0051082 K09488
gene-evm.TU.Chr1.845 rna-evm.model.Chr1.845 Chr1 26636531 26643757 PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit GO:0015078;GO:1902600;GO:0033177;GO:0033179 K02155
gene-evm.TU.Chr1.846 rna-evm.model.Chr1.846 Chr1 26657602 26677487 PREDICTED: Periodic tryptophan protein 2 homolog GO:0005515 K14558
gene-evm.TU.Chr1.847 rna-evm.model.Chr1.847 Chr1 26679258 26682692 PREDICTED: Tripartite motif-containing protein 45 GO:0008270 K12026

For more detailed data, you can explore the Download section to access the full dataset.