CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.826 rna-evm.model.Chr1.826 Chr1 25934174 25946436 PREDICTED: myosin heavy chain GO:0005741;GO:0035694 K10060
gene-evm.TU.Chr1.827 rna-evm.model.Chr1.827 Chr1 25946973 25953211 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.828 rna-evm.model.Chr1.828 Chr1 25987980 26020030 PREDICTED: Sorbin and SH3 domain-containing protein 1 GO:0005515 K19862
gene-evm.TU.Chr1.829 rna-evm.model.Chr1.829 Chr1 26071412 26076346 uncharacterized protein GO:0005515 K20520
gene-evm.TU.Chr1.830 rna-evm.model.Chr1.830 Chr1 26092778 26104600 uncharacterized protein nan K14996
gene-evm.TU.Chr1.831 rna-evm.model.Chr1.831 Chr1 26156829 26203434 PREDICTED: Heat shock protein 75 kDa, mitochondrial GO:0005524;GO:0006457;GO:0051082 K09488
gene-evm.TU.Chr1.832 rna-evm.model.Chr1.832 Chr1 26224038 26254925 PREDICTED: Heat shock protein 75 kDa, mitochondrial GO:0005515;GO:0005524;GO:0006457;GO:0051082 K09488
gene-evm.TU.Chr1.833 rna-evm.model.Chr1.833 Chr1 26260501 26265567 PREDICTED: Heat shock protein 75 kDa, mitochondrial nan K09488
gene-evm.TU.Chr1.835 rna-evm.model.Chr1.835 Chr1 26294176 26294603 PREDICTED: KRAB domain-containing zinc finger protein nan K07499
gene-evm.TU.Chr1.837 rna-evm.model.Chr1.837 Chr1 26361061 26362596 PREDICTED: Protein kinase C and casein kinase substrate in neurons protein 1 GO:0005515 K20123

For more detailed data, you can explore the Download section to access the full dataset.