CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.813 rna-evm.model.Chr1.813 Chr1 25577912 25598628 PREDICTED: Transmembrane protein 232 nan K13908
gene-evm.TU.Chr1.814 rna-evm.model.Chr1.814 Chr1 25601535 25622704 PREDICTED: Linear gramicidin synthase subunit D GO:0003824;GO:0031177 K16416
gene-evm.TU.Chr1.815 rna-evm.model.Chr1.815 Chr1 25643715 25644622 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr1.819 rna-evm.model.Chr1.819 Chr1 25742159 25802777 PREDICTED: Phospholipid-transporting ATPase IA GO:0000287;GO:0140326;GO:0005524;GO:0015914;GO:0016020 K14802
gene-evm.TU.Chr1.820 rna-evm.model.Chr1.820 Chr1 25833350 25837556 PREDICTED: Protein unc-50 homolog A nan K09167
gene-evm.TU.Chr1.821 rna-evm.model.Chr1.821 Chr1 25843543 25859000 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr1.822 rna-evm.model.Chr1.822 Chr1 25863578 25865436 PREDICTED: Neuronal acetylcholine receptor subunit beta-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04814
gene-evm.TU.Chr1.823 rna-evm.model.Chr1.823 Chr1 25885683 25887494 PREDICTED: Acetylcholine receptor subunit alpha GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr1.824 rna-evm.model.Chr1.824 Chr1 25907758 25925856 uncharacterized protein nan K24462
gene-evm.TU.Chr1.825 rna-evm.model.Chr1.825 Chr1 25928946 25932220 PREDICTED: FMRFamide receptor GO:0004930;GO:0007186;GO:0016020 K08428

For more detailed data, you can explore the Download section to access the full dataset.