CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.80 rna-evm.model.Chr1.80 Chr1 2761424 2762515 PREDICTED: Translation initiation factor IF-2 nan K20394
gene-evm.TU.Chr1.801 rna-evm.model.Chr1.801 Chr1 25141374 25142013 PREDICTED: E3 ubiquitin-protein ligase Midline-1 GO:0008270 K12026
gene-evm.TU.Chr1.803 rna-evm.model.Chr1.803 Chr1 25263759 25287411 PREDICTED: collagen, type X, alpha nan K24236
gene-evm.TU.Chr1.804 rna-evm.model.Chr1.804 Chr1 25301019 25302547 PREDICTED: Complement C1q-like protein 2 nan K23284
gene-evm.TU.Chr1.806 rna-evm.model.Chr1.806 Chr1 25324480 25382211 PREDICTED: cGMP-dependent 3',5'-cyclic phosphodiesterase GO:0004114;GO:0005515;GO:0007165;GO:0008081 K18283
gene-evm.TU.Chr1.807 rna-evm.model.Chr1.807 Chr1 25449150 25463115 PREDICTED: ATP-dependent RNA helicase DDX58 [EC:3.6.4.13] GO:0042981 K12646
gene-evm.TU.Chr1.808 rna-evm.model.Chr1.808 Chr1 25472143 25472636 PREDICTED: clam ADP-ribosylating protein CARP-1 nan K26272
gene-evm.TU.Chr1.809 rna-evm.model.Chr1.809 Chr1 25490288 25502212 PREDICTED: ATP-dependent RNA helicase DDX58 [EC:3.6.4.13] nan K12646
gene-evm.TU.Chr1.810 rna-evm.model.Chr1.810 Chr1 25526440 25527197 PREDICTED: organic solute transporter subunit alpha GO:0003676;GO:0008270 K12896
gene-evm.TU.Chr1.812 rna-evm.model.Chr1.812 Chr1 25573000 25577883 PREDICTED: Complex III assembly factor LYRM7 nan K18170

For more detailed data, you can explore the Download section to access the full dataset.