CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.787 rna-evm.model.Chr1.787 Chr1 24888360 24917774 PREDICTED: Cholecystokinin receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr1.788 rna-evm.model.Chr1.788 Chr1 24976688 24979728 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr1.789 rna-evm.model.Chr1.789 Chr1 24983474 24984573 uncharacterized protein nan nan
gene-evm.TU.Chr1.79 rna-evm.model.Chr1.79 Chr1 2760181 2761275 PREDICTED: Uncharacterized protein in mobD 3'region nan K15352
gene-evm.TU.Chr1.790 rna-evm.model.Chr1.790 Chr1 24985672 24986245 PREDICTED: tripartite motif-containing protein 33 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr1.791 rna-evm.model.Chr1.791 Chr1 24988369 24992586 PREDICTED: tripartite motif-containing protein 2/3 GO:0008270 K12026
gene-evm.TU.Chr1.794 rna-evm.model.Chr1.794 Chr1 25031281 25031619 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr1.795 rna-evm.model.Chr1.795 Chr1 25033859 25034379 uncharacterized protein nan nan
gene-evm.TU.Chr1.797 rna-evm.model.Chr1.797 Chr1 25064614 25073069 uncharacterized protein nan K06846
gene-evm.TU.Chr1.799 rna-evm.model.Chr1.799 Chr1 25098632 25122447 PREDICTED: Polyketide synthase PksJ nan K13614

For more detailed data, you can explore the Download section to access the full dataset.