CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.772 rna-evm.model.Chr1.772 Chr1 24144113 24145026 PREDICTED: neurotrophic tyrosine kinase, receptor type 3 [EC:2.7.10.1] nan K24674
gene-evm.TU.Chr1.773 rna-evm.model.Chr1.773 Chr1 24198369 24228791 PREDICTED: Protein bir1 nan K08731
gene-evm.TU.Chr1.774 rna-evm.model.Chr1.774 Chr1 24255797 24256135 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 nan
gene-evm.TU.Chr1.775 rna-evm.model.Chr1.775 Chr1 24256165 24256611 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr1.779 rna-evm.model.Chr1.779 Chr1 24313787 24458462 PREDICTED: TBC1 domain family member 19 nan K20396
gene-evm.TU.Chr1.780 rna-evm.model.Chr1.780 Chr1 24573732 24582840 PREDICTED: M-phase phosphoprotein 8 nan K17974
gene-evm.TU.Chr1.781 rna-evm.model.Chr1.781 Chr1 24583051 24600124 PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2 nan K15352
gene-evm.TU.Chr1.782 rna-evm.model.Chr1.782 Chr1 24736173 24736595 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr1.783 rna-evm.model.Chr1.783 Chr1 24736605 24738798 PREDICTED: putative nuclease HARBI1-like nan nan
gene-evm.TU.Chr1.786 rna-evm.model.Chr1.786 Chr1 24859995 24862123 PREDICTED: Protein PML nan K10054

For more detailed data, you can explore the Download section to access the full dataset.