CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.759 rna-evm.model.Chr1.759 Chr1 23776127 23786464 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.761 rna-evm.model.Chr1.761 Chr1 23845328 23848492 uncharacterized protein nan K05162
gene-evm.TU.Chr1.762 rna-evm.model.Chr1.762 Chr1 23850064 23856721 PREDICTED: tumor necrosis factor receptor superfamily member EDAR GO:0005515;GO:0007165 K05162
gene-evm.TU.Chr1.763 rna-evm.model.Chr1.763 Chr1 23875411 23877951 uncharacterized protein nan K16889
gene-evm.TU.Chr1.764 rna-evm.model.Chr1.764 Chr1 23877955 23885586 PREDICTED: exocyst complex component 1 nan nan
gene-evm.TU.Chr1.765 rna-evm.model.Chr1.765 Chr1 23955046 23958280 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.766 rna-evm.model.Chr1.766 Chr1 23994493 23995536 PREDICTED: glucuronosyltransferase [EC:2.4.1.17] GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr1.767 rna-evm.model.Chr1.767 Chr1 23995851 23996426 PREDICTED: gamma-tubulin complex component 6 nan K26575
gene-evm.TU.Chr1.768 rna-evm.model.Chr1.768 Chr1 23997699 23999063 uncharacterized protein nan K03174
gene-evm.TU.Chr1.771 rna-evm.model.Chr1.771 Chr1 24138905 24140065 PREDICTED: Zinc finger protein 862 GO:0046983 K24644

For more detailed data, you can explore the Download section to access the full dataset.