CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.747 rna-evm.model.Chr1.747 Chr1 23207371 23208561 PREDICTED: UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr1.748 rna-evm.model.Chr1.748 Chr1 23211012 23221154 PREDICTED: Multiple epidermal growth factor-like domains protein 6 nan K24068
gene-evm.TU.Chr1.75 rna-evm.model.Chr1.75 Chr1 2628949 2701722 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.751 rna-evm.model.Chr1.751 Chr1 23353070 23375867 PREDICTED: Glycine receptor subunit alpha-2 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.752 rna-evm.model.Chr1.752 Chr1 23385170 23399032 PREDICTED: organic solute transporter subunit alpha nan nan
gene-evm.TU.Chr1.753 rna-evm.model.Chr1.753 Chr1 23406371 23420297 PREDICTED: Glycine receptor subunit alpha-2 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05194
gene-evm.TU.Chr1.754 rna-evm.model.Chr1.754 Chr1 23497235 23498831 PREDICTED: Hemicentin-1 nan K06774
gene-evm.TU.Chr1.755 rna-evm.model.Chr1.755 Chr1 23605905 23618502 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.757 rna-evm.model.Chr1.757 Chr1 23630964 23642435 PREDICTED: Glycine receptor subunit alpha-3 GO:0004888;GO:0004890;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0016020;GO:0034220 K05193
gene-evm.TU.Chr1.758 rna-evm.model.Chr1.758 Chr1 23715124 23716698 PREDICTED: Hemicentin-1 nan K06774

For more detailed data, you can explore the Download section to access the full dataset.