CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.736 rna-evm.model.Chr1.736 Chr1 22912531 22913526 uncharacterized protein nan K19532
gene-evm.TU.Chr1.739 rna-evm.model.Chr1.739 Chr1 22927962 22941024 PREDICTED: Centrin-2 GO:0005509 K16465
gene-evm.TU.Chr1.74 rna-evm.model.Chr1.74 Chr1 2610858 2625940 PREDICTED: Zinc finger protein 330 GO:0005634;GO:0008270 K14767
gene-evm.TU.Chr1.740 rna-evm.model.Chr1.740 Chr1 22942964 22961906 PREDICTED: COMM domain containing 6 nan K22562
gene-evm.TU.Chr1.741 rna-evm.model.Chr1.741 Chr1 22999514 23000320 PREDICTED: Armadillo repeat-containing protein 7 nan K24825
gene-evm.TU.Chr1.742 rna-evm.model.Chr1.742 Chr1 23054223 23055443 PREDICTED: Armadillo repeat-containing protein 7 nan K24825
gene-evm.TU.Chr1.743 rna-evm.model.Chr1.743 Chr1 23069619 23082289 PREDICTED: Protocadherin-1 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.744 rna-evm.model.Chr1.744 Chr1 23083905 23088134 uncharacterized protein GO:0003676 nan
gene-evm.TU.Chr1.745 rna-evm.model.Chr1.745 Chr1 23089531 23091086 uncharacterized protein nan nan
gene-evm.TU.Chr1.746 rna-evm.model.Chr1.746 Chr1 23091649 23094695 PREDICTED: type IX secretion system membrane protein PorP/SprF nan K12384

For more detailed data, you can explore the Download section to access the full dataset.