CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.721 rna-evm.model.Chr1.721 Chr1 22449666 22480502 PREDICTED: WD repeat-containing protein 17 GO:0005515 K24740
gene-evm.TU.Chr1.722 rna-evm.model.Chr1.722 Chr1 22481156 22497746 PREDICTED: Gem-associated protein 8 GO:0000387;GO:0003676;GO:0008270;GO:0032797 K13136
gene-evm.TU.Chr1.723 rna-evm.model.Chr1.723 Chr1 22498242 22502383 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.724 rna-evm.model.Chr1.724 Chr1 22508990 22520663 PREDICTED: Protein ABHD18 nan K11997
gene-evm.TU.Chr1.725 rna-evm.model.Chr1.725 Chr1 22527519 22577639 PREDICTED: Polycystic kidney disease and receptor for egg jelly-related protein GO:0005509;GO:0005515;GO:0016020 K04988
gene-evm.TU.Chr1.726 rna-evm.model.Chr1.726 Chr1 22694034 22739750 PREDICTED: Polycystic kidney disease and receptor for egg jelly-related protein GO:0005509;GO:0005515;GO:0016020 K04988
gene-evm.TU.Chr1.728 rna-evm.model.Chr1.728 Chr1 22762716 22826867 uncharacterized protein GO:0003677 K24637
gene-evm.TU.Chr1.73 rna-evm.model.Chr1.73 Chr1 2526807 2591024 PREDICTED: Protocadherin-11 X-linked GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.730 rna-evm.model.Chr1.730 Chr1 22881745 22882872 uncharacterized protein nan K25828
gene-evm.TU.Chr1.731 rna-evm.model.Chr1.731 Chr1 22885096 22885482 PREDICTED: protocadherin Fat 4 GO:0003677;GO:0006310;GO:0015074 K04763

For more detailed data, you can explore the Download section to access the full dataset.