CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.710 rna-evm.model.Chr1.710 Chr1 22165915 22178466 PREDICTED: Hsc70-interacting protein GO:0005515;GO:0046983 K09560
gene-evm.TU.Chr1.711 rna-evm.model.Chr1.711 Chr1 22188398 22191352 uncharacterized protein nan nan
gene-evm.TU.Chr1.714 rna-evm.model.Chr1.714 Chr1 22202713 22218899 PREDICTED: P protein GO:0016020;GO:0055085 K24200
gene-evm.TU.Chr1.715 rna-evm.model.Chr1.715 Chr1 22223373 22231784 PREDICTED: WW domain-binding protein 4 GO:0000398;GO:0003676;GO:0005515;GO:0005634;GO:0008270 K13220
gene-evm.TU.Chr1.716 rna-evm.model.Chr1.716 Chr1 22252539 22266990 PREDICTED: MBT domain-containing protein 1 GO:0005515;GO:0005634;GO:0006355;GO:0008270 K26270
gene-evm.TU.Chr1.717 rna-evm.model.Chr1.717 Chr1 22287514 22372704 PREDICTED: Stromal interaction molecule 2 GO:0005246;GO:0005515 K16059
gene-evm.TU.Chr1.718 rna-evm.model.Chr1.718 Chr1 22379984 22399716 PREDICTED: Steroid receptor RNA activator 1 GO:0006357;GO:0030374 K14005
gene-evm.TU.Chr1.719 rna-evm.model.Chr1.719 Chr1 22409973 22437107 PREDICTED: Low affinity vacuolar monovalent cation/H(+) antiporter GO:0016020;GO:0055085 K07300
gene-evm.TU.Chr1.72 rna-evm.model.Chr1.72 Chr1 2485440 2486449 PREDICTED: Immunoglobulin G-binding protein A nan K08631
gene-evm.TU.Chr1.720 rna-evm.model.Chr1.720 Chr1 22439125 22446199 PREDICTED: Chymotrypsin-like elastase family member 2A GO:0004252;GO:0006508 K01326

For more detailed data, you can explore the Download section to access the full dataset.