CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.699 rna-evm.model.Chr1.699 Chr1 21749120 21767603 uncharacterized protein nan K11456
gene-evm.TU.Chr1.70 rna-evm.model.Chr1.70 Chr1 2332735 2338494 PREDICTED: DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6] nan K20394
gene-evm.TU.Chr1.700 rna-evm.model.Chr1.700 Chr1 21774908 21791492 PREDICTED: Nucleoside diphosphate kinase GO:0004550;GO:0006165;GO:0006183;GO:0006228;GO:0006241 K00940
gene-evm.TU.Chr1.701 rna-evm.model.Chr1.701.7 Chr1 21797282 21819167 PREDICTED: Ankyrin repeat domain-containing protein 10 GO:0005515 K15502
gene-evm.TU.Chr1.702 rna-evm.model.Chr1.702 Chr1 21819416 21841608 PREDICTED: Sorting nexin-25 GO:0035091 K17887
gene-evm.TU.Chr1.705 rna-evm.model.Chr1.705 Chr1 21896253 21897922 PREDICTED: Protein MB21D2 nan K23092
gene-evm.TU.Chr1.706 rna-evm.model.Chr1.706.1 Chr1 21960064 22068835 PREDICTED: Protein furry homolog GO:0000902 nan
gene-evm.TU.Chr1.707 rna-evm.model.Chr1.707 Chr1 22085107 22119746 PREDICTED: Small glutamine-rich tetratricopeptide repeat-containing protein 2 GO:0005515;GO:0043531 K09527
gene-evm.TU.Chr1.708 rna-evm.model.Chr1.708 Chr1 22124084 22158925 PREDICTED: Xaa-Pro aminopeptidase 3 GO:0004177;GO:0030145 K18573
gene-evm.TU.Chr1.71 rna-evm.model.Chr1.71 Chr1 2401873 2436197 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498

For more detailed data, you can explore the Download section to access the full dataset.