CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.683 rna-evm.model.Chr1.683.1 Chr1 20936213 20971901 PREDICTED: Ankyrin repeat domain-containing protein 50 GO:0005515 K21440
gene-evm.TU.Chr1.684 rna-evm.model.Chr1.684 Chr1 21018142 21020405 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr1.685 rna-evm.model.Chr1.685 Chr1 21206755 21210448 uncharacterized protein nan K06733
gene-evm.TU.Chr1.686 rna-evm.model.Chr1.686 Chr1 21270391 21272426 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan K06213
gene-evm.TU.Chr1.687 rna-evm.model.Chr1.687 Chr1 21272682 21280225 PREDICTED: KRAB domain-containing zinc finger protein nan K13631
gene-evm.TU.Chr1.69 rna-evm.model.Chr1.69 Chr1 2240166 2245263 PREDICTED: AF4/FMR2 family member 4 nan K04223
gene-evm.TU.Chr1.690 rna-evm.model.Chr1.690 Chr1 21507133 21516587 PREDICTED: Homeobox protein CHOX-CAD GO:0003677 K09312
gene-evm.TU.Chr1.693 rna-evm.model.Chr1.693 Chr1 21604144 21612363 PREDICTED: Collagen alpha-5(VI) chain nan K06238
gene-evm.TU.Chr1.697 rna-evm.model.Chr1.697 Chr1 21722441 21723786 PREDICTED: fucolectin-1-like nan nan
gene-evm.TU.Chr1.698 rna-evm.model.Chr1.698 Chr1 21742014 21742469 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.